Ariba is looking into a "fix" for the Template Upgrade to Ignore Assembled Doc's. That being said it is important that we all put in Enhancement Requests into Connect. This will only enforce that it is a necessary enhancement/addition. The more visibility customers give that its wanted, the faster it should get implemented.
This is the case for many items discussed. As a community we need to get unified Requests into Connect for these types of issues that need fixing or enhancing.
Everyone, please go to Ariba Connect and log an Enhancement Request.
Thanks,
Rich